ClickUp MCP Server (official remote) vs mcp-atlassian (community Jira/Confluence)

A side-by-side comparison of two Productivity servers — tools, transport, auth, maintenance, and copy-paste config for each.

	ClickUp MCP Server (official remote) ClickUp's first-party hosted MCP server with OAuth for tasks, docs, comments, and reporting. Verified HTTP (remote) OAuth Stale TypeScript	mcp-atlassian (community Jira/Confluence) Self-hosted MCP server for Jira and Confluence Cloud and Server/Data Center. Verified stdio (local) API key Python
Category	Productivity	Productivity
Language	TypeScript	Python
Transport	HTTP (remote)	stdio (local)
Auth	OAuth	API key
GitHub stars	0	5.4k
Last commit	unknown	2 months ago
Verified
Actively maintained
Install	`Add remote MCP URL https://mcp.clickup.com/mcp and complete OAuth`	`uvx mcp-atlassian`
Repo	Open	Open

Verdict

Pick ClickUp MCP Server (official remote) if you want the official, vendor-maintained server, and you want a hosted/remote server with nothing to install.

Pick mcp-atlassian (community Jira/Confluence) if you prefer the more popular, battle-tested option, and you want a local (stdio) server that keeps data on your machine.

Add ClickUp MCP Server (official remote)

Install / run

Add remote MCP URL https://mcp.clickup.com/mcp and complete OAuth

Paste into ~/Library/Application Support/Claude/claude_desktop_config.json

{
  "mcpServers": {
    "clickup-mcp-server-official-remote": {
      "command": "npx",
      "args": [
        "-y",
        "mcp-remote",
        "https://mcp.clickup.com/mcp"
      ]
    }
  }
}

Claude Desktop connects to remote servers through the `mcp-remote` proxy (installed on first run via npx). Restart Claude Desktop after saving.

Add mcp-atlassian (community Jira/Confluence)

Install / run

uvx mcp-atlassian

Paste into ~/Library/Application Support/Claude/claude_desktop_config.json

{
  "mcpServers": {
    "mcp-atlassian-community-jira-confluence": {
      "command": "uvx",
      "args": [
        "mcp-atlassian"
      ],
      "env": {
        "JIRA_URL": "https://your-company.atlassian.net",
        "JIRA_USERNAME": "<your-email@company.com>",
        "CONFLUENCE_URL": "https://your-company.atlassian.net/wiki",
        "JIRA_API_TOKEN": "<your-jira-api-token>",
        "CONFLUENCE_USERNAME": "<your-email@company.com>",
        "CONFLUENCE_API_TOKEN": "<your-confluence-api-token>"
      }
    }
  }
}

Requires `uv` (the Python package runner). Install it from https://docs.astral.sh/uv/ if `uvx` is not found.

FAQ

ClickUp MCP Server (official remote) or mcp-atlassian (community Jira/Confluence) — which is better?

Pick ClickUp MCP Server (official remote) if you want the official, vendor-maintained server, and you want a hosted/remote server with nothing to install. Pick mcp-atlassian (community Jira/Confluence) if you prefer the more popular, battle-tested option, and you want a local (stdio) server that keeps data on your machine.

Can I use both ClickUp MCP Server (official remote) and mcp-atlassian (community Jira/Confluence)?

Yes — MCP clients let you enable multiple servers at once. Add both configs to your client's mcpServers and use whichever tool fits the task.

Do ClickUp MCP Server (official remote) and mcp-atlassian (community Jira/Confluence) work with Claude, Cursor and Windsurf?

Both do. Copy the per-client config below into Claude Desktop, Cursor, or Windsurf.

View ClickUp MCP Server (official remote) →View mcp-atlassian (community Jira/Confluence) →More comparisons →